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Archaeal transcription

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Through Bacteria and Operon

Because archaea lack a membrane-enclosed nucleus like bacteria do, transcription and translation can happen at the same time on a newly-generated piece of mRNA. Operons are widespread in archaea.

Initiation

Initiation in archaea is governed by TATA-binding protein (TBP), Archaeal transcription factor B (TFB), and Archaeal transcription factor E (TFE) that are homologous to eukaryotic TBP, TFIIB, and TFIIE respectively. These factors recognize the promoter core sequence (TATA box, B recognition element) upstream of the coding region and recruits the RNAP to form a closed transcription preinitiation complex (PIC).

The PIC is turned into an open state with the local DNA helix "melting" to load the template strand of DNA. The RNAP undergoes "abortive initiation": it makes and releases many short (2-15nt) segments before generating a transcript of significant length. This continues until it moves past the promoter (promoter escape), loosening TBP's grasp on the DNA, and swapping TFE out for elongation factors Spt4/5. How this escape happens exactly remains to be studied.

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