MICrONS
Research project conducted by the US
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Through Machine learning, Artificial intelligence and Visual perception
Teams
The program has set up three independent teams, each of which will take a different approach towards the goal. The teams are led by David Cox of Harvard University, Tai Sing Lee of Carnegie Mellon University; and jointly by Andreas Tolias and Xaq Pitkow of the Baylor College of Medicine, Clay Reid of the Allen Institute for Brain Science, and Sebastian Seung of Princeton University.
The Cox team aimed to build a three-dimensional map of the neural connections within the source tissue block using reconstructions from electron micrographs.
Technology and infrastructure for storing petabyte-scale volumetric data, including a cloud-based database, bossDB, were developed by the Johns Hopkins Applied Physics Lab.
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Approach
The part of the brain chosen for the project is part of the visual cortex, chosen as a representative of a task – visual perception – that is easy for animals and human beings to perform, but has turned out to be extremely difficult to emulate with computers.
Cox's team attempted to build a three dimensional mapping of the actual neural connections, based on fine electron micrographs. Lee's team took a DNA barcoding approach, in attempt to map the brain circuits by barcode-labelling of each neuron, and cross-synapse barcode connections.
Tolias's team took a data-driven approach, assuming the brain creates statistical expectations about the world it sees. They used multiphoton microscopy to record activity of nearly every neuron in the cubic millimeter of visual cortex in response to diverse and rich visual stimuli. Data aggregation, processing, and analysis were performed using the DataJoint framework.
Results
The primary data has been collected, processed, and submitted for publication:
- Bae, J. Alexander; et al. (2025). "Functional connectomics spanning multiple areas of mouse visual cortex". Nature. 640 (8058): 435–447. bioRxiv 10.1101/2021.07.28.454025. doi:10.1038/s41586-025-08790-w. PMC 11981939. PMID 40205214.
This data is available as a public resource.