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Ocular surface microbiome

Human microbiome of the eye

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  • 3 chapters

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Through Bacteria, Fungus and Epithelium

Some microbes found on the ocular surface have been associated with keratitis, Stevens-Johnson syndrome, trachoma, contact lens-induced dysbiosis, Sjorgen's syndrome, dry eye disease, blepharitis, diabetes-induced dysbiosis and retinopathy. Extended use of contact lenses leads to an increased risk of ocular infections.

Composition

Approximately 98% of microbiota on the ocular surface are bacteria, while viruses and fungi account for about 1% each. The microbiota play a role in maintaining homeostasis of the ocular surface and preventing the colonisation of pathogens.

Bacteria

The dominant phyla found in the ocular microbiome are Actinomycetota, Proteobacteria, and Firmicutes, making up 46%, 24% and 22% of the total bacteria, respectively. The genera of Corynebacterium and Staphylococcus are the most prevalent. Pseudomonas, which is not considered part of the healthy eye, has been consistently identified across numerous studies.

Bacteria of the ocular surface have a protective immunoregulatory function and help increase resistance to pathogenic bacterial infections, and therefore the use of antibiotics or other antimicrobials may cause a disruption to this process. It was also found that in contact lens wearers the bacterial residents of the microbiome are altered towards a community more akin to that of the skin microbiome.

Viruses

Several viruses are found on the microbiome, including torque teno virus (TTV), Merkel cell polyomavirus, and human papillomavirus. In a healthy conjunctiva, multiple sclerosis–associated retrovirus and TTV are found. TTV is the most predominant viral resident on the ocular microbiome, and in one study was found in 65% of samples.

It was found that the removal of Corynebacterium mastitis, a gram-positive bacterium, makes the microbiome more susceptible to infections.

Fungi

In children and adolescents, Candida albicans can be present, but it was found to be more common postmortem than pre-surgically. The genera of Aspergillus, Setosphaeria, Malassezia, and Haematonectria are largely prevalent on the conjuctiva. Opportunistic pathogens may be found on the healthy ocular surface fungal microbiomes.

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