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Vibrio harveyi

Species of bacterium

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Through Gram-negative bacteria, Fermentation and Invertebrate

Certain strains of V. harveyi can cause disease in marine life, such as luminous vibriosis — a disease that causes commercially farmed penaeid prawns to glow in the dark. The pathogenicity of these strains can be enhanced in environments affected by climate change, primarily due to the weakening of marine hosts. Despite its harmful effects, V. harveyi plays a beneficial role in nutrient cycling by using chitin — a building block of marine invertebrate exoskeletons — as a carbon source. It does so by breaking chitin down into simpler molecules that are used and eventually returned to the aquatic system to be taken up by other organisms. This species is also thought to be the cause of the milky seas effect, in which, a uniform blue glow is emitted from seawater during the night. Some glows can cover nearly 6,000 sq mi (16,000 km²).

Genome & taxonomy

Phylogeny

Taxonomy classification

Vibrio harveyi belongs to the bacterial kingdom under the Pseudomonadota phylum and is classed as a Gammaproteobacteria. More specifically, it belongs to the Vibrionaceae family and therefore the Vibrio genus. It also belongs to the Harveyi clade alongside Vibrio campbellii, Vibrio natriegens, Vibrio alginolyticus, and Vibrio parahaemolyticus.

Relations to other Vibrio species

Although closely related to V. campbellii — with a DNA similarity of 61% to 74% — V. harveyi has also been found to contain similar genes to other bacteria outside its clade such as Vibrio cholerae, specifically thought to have occurred through Horizontal Gene Transfer. This was hypothesized after ToxR, a regulator for the cholera toxin gene, was found to exist within all Vibrio species within the Harveyi clade.

Genome structure

The genomes of five different strains of V. harveyi — ATCC 33843, FDAARGOS_107, QT520, WXL345, and WXL538 — were sequences and analyzed, finding the following information:

Genome size

The genome size of the five different strains of V. harveyi ranges from 5.88 to 6.18 Mb in length.

G-C bases in DNA

Out of all the DNA sequenced in the five different strains of V. harveyi, the percent of G-C bases was found to be anywhere from 44.75% to 45.05%.

Large circular chromosome (Chr1)

This chromosome contains the genes that encode for cellular components that handle the maintenance of everyday functions, such as ribosomal proteins.

Small circular chromosome (Chr2)

This chromosome contains the genes that encode for more specialized functions such as antibiotic resistance, pathogenicity, and adaptation.

Plasmids

Several V. harveyi isolates were analyzed with long-read sequencing resulting in the identification of different kinds of plasmids existing within the isolates.

Plasmid use

These plasmids act as storage for important genes V. harveyi can use to increase its pathogenicity, antibiotic-resistance, and adaptation. They also play a major role in Horizontal Gene Transfer, meaning that individuals of a strain are able to transfer genes and gain genes from individuals of another strain, by a process called conjugation. This exchange of traits from other bacteria allows V. harveyi to adapt rapidly as it does not have to solely wait for evolution or mutation to gain access to new traits like many other species.

Discovered effects of plasmids in V. harveyi

Two isolates of V. harveyi — Vh-14 and Vh-15 — were discovered to be completely (100%) lethal towards Barramundi fish due to the unique characteristics of their plasmids. Both strains possessed a large conjugative plasmid made up of ~105,412 base pairs that was found to carry major virulence genes such as Type III Secretion System genes. The lethality of these isolates is in part due to the size of their plasmids. The size allowed them to carry more genes specialized in pathogenicity, effectively increasing the pathogenic capabilities of the isolates.

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