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Miracinonyx

Extinct genus of mammal

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The first fossils ascribed to Miracinonyx were described by the American paleontologist Edward Drinker Cope in the late 19th century, who thought the remains belonged to an extinct relative of the spotted hyena or snow leopard. In 1979, American researcher Daniel B. Adams named Miracinonyx as a subgenus of Acinonyx, the genus that includes the modern cheetah, with M. trumani as the type species. In 1990, American paleontologist Blaire Van Valkenburgh and colleagues recognized Miracinonyx as a distinct genus, and re-evaluated the fossils described by Cope as belonging to an older species of the same genus, M. inexpectatus. Alternatively, Miracinonyx may represent a subgenus of Puma, the genus that includes the cougar, on the basis of genetic evidence supporting a close relationship.

M. inexpectatus lived between the Late Pliocene and Middle Pleistocene (Blancan and Irvingtonian faunal stages), from 3.1 to 0.6 million years ago, while M. trumani lived during the Late Pleistocene (Rancholabrean faunal stage), between 52,000 and 16,000 years ago. The fossils of Miracinonyx were known from the United States, Mexico and Yukon, Canada. Paleontologists initially considered this taxon to be specialized in chasing down cursorial herbivores like the pronghorn on open grasslands. However, isotopic analysis and fossil discoveries from diverse environments, including the mountainous terrain of Grand Canyon and the Arctic habitats of Yukon, suggested that Miracinonyx likely had a broader diet than previously thought.

Taxonomy

Between 1894 and 1896, American scientist Samuel Gibson Dixon and American archeologist Henry Chapman Mercer, with the assistance of S. N. Rhoads and D. N. McCadden, discovered various vertebrate fossils from the Port Kennedy Bone Cave of Port Kennedy, Pennsylvania, dated to the late Early to Middle Pleistocene (Irvingtonian faunal stage), approximately between 1 and 0.7 million years ago. In an 1895 paper, American paleontologist Edward Drinker Cope described a set of right carnassial teeth (4th upper premolar and 1st lower molar teeth) found in this excavation as Crocuta inexpectata, a new species within the genus that includes the spotted hyena. The Latin word 'inexpectatus' ('inexpectata' in feminine form) means "unlooked for". Cope suggested that the absence of a metaconid, a raised point of tooth crown on the front-inner corner of the lower molar tooth, was a shared characteristic with the genus Crocuta, though he expressed uncertainty in his classification and noted that the teeth may potentially belong to Nimravus, an extinct genus of feliforms (cat-like carnivorans).

In his posthumous 1899 publication, Cope assigned other fossils from the same excavation to the species and reclassified the holotype teeth, accessioned as ANSP 52, as Uncia inexpectata. The assigned specimens included a right lower jaw fragment, two carnassial teeth, 1st premolar, three incisor teeth from the lower jaw, canine teeth from the upper jaw, humerus (upper arm bone), metacarpal bones (palm bones) and phalanges (toe bones). After comparing the holotype and other assigned specimens to the teeth of the genus Uncia that included the snow leopard (currently synonymous with the genus Panthera), Cope found the sharp edge of the metacone, a raised point of tooth crown in the corner of an upper molar tooth, to be similar in shape, and the premolar tooth crown to be similar in robustness.

In 1929 and 1941, American paleontologist George Gaylord Simpson reported more Pleistocene fossil material of U. inexpectata that was found in Florida, Maryland and Arkansas. He considered the species to be more closely related to the cougar based on the similar shape of the jaw and the relatively small size of the 4th premolar compared to that of the 1st lower molar, and thus reassigned U. inexpectata as Felis (Puma) inexpectata. He also recognized two fossil species of Felis described by the American paleontologist Barnum Brown in 1908, F. cougar known from a lower jaw fragment and F. longicrus known from an isolated 4th premolar, and a putative species of machairodont (saber-toothed cat) described by the American paleontologist Oliver Perry Hay in 1920 based on an isolated 4th premolar, Smilodontopsis mooreheadi, as junior synonyms of F. inexpectata. In 1960, American researcher Donald E. Savage described Felis studeri based on the rear portion of a skull, accessioned as WT 629, recovered from the Cita Canyon in Randall County, Texas dated to the Late Pliocene (Blancan faunal stage). A 1976 review of fossil pumas by Finnish researcher Björn Kurtén considered F. inexpectata and F. studeri to be the same species, with F. inexpectata having priority.

In 1969, American scientist Phil C. Orr named Felis trumani based on a complete skull and partial postcranial skeleton discovered from the Crypt Cave in Pershing County, Nevada, consisting of neck vertebrae, thoracic vertebrae (spine segment that forms the upper back), rib bones and left scapula (shoulder blade). The species was named after Orley H. Truman, the founder and first president of the Western Speleological Institute (WSI) at the Santa Barbara Museum of Natural History in Santa Barbara, California, and its holotype was accessioned as WSI P3a/450 and radiocarbon dated to 19,750 ± 650 years Before Present. In 1979, American researcher Daniel B. Adams coined Miracinonyx as a new subgenus of the genus Acinonyx, with F. trumani as type species: Acinonyx (Miracinonyx) trumani. The subgeneric name, Miracinonyx, is derived from the Latin word mirus ('surprising') and the genus Acinonyx which includes the modern cheetah (A. jubatus). He assigned specimens from the Natural Trap Cave near Lovell, Wyoming, housed in the University of Kansas Vertebrate Paleontology (KUVP) collection, including skull and postcranial material representing at least six individuals of this species. Adams also included F. studeri as a second species of Miracinonyx, assigned to as Acinonyx (Miracinonyx) studeri. While he recognized Kurtén's proposed synonymy, Adams considered F. inexpectata as a nomen dubium (dubious name) because the fragmentary isolated 4th premolar of the holotype prevented definitive classification. In 1990, American paleontologist Blaire Van Valkenburgh and colleagues reassigned Miracinonyx as a distinct genus, and supported the synonymy of "F." studeri and "F." inexpectata, resulting in a new combination, M. inexpectatus.

Evolution

It is uncertain how M. inexpectatus evolved into M. trumani due to the temporal gap between the youngest known fossils of M. inexpectatus and the oldest of M. trumani. The youngest known fossils of M. inexpectatus are from the Conard Fissure in Newton County, Arkansas, consisting of teeth, partial skull and arm bone fragments dated to approximately 600,000 years ago, and possibly the oldest known fossil of M. trumani is from the Mineral Hill Cave in Elko County, Nevada, the fourth metatarsal bone (foot bone between ankle and toes) assigned to cf. ('compares well to') M. trumani and radiocarbon dated to approximately 52,200 years Before Present.MEGA14C It is possible that the genus rapidly developed smaller body size and more adaptations to running within this temporal gap, or that M. trumani evolved from an unknown species of Miracinonyx.

In 1977, American paleontologist Larry Martin and colleagues argued that M. trumani was a close relative of the cougar based on similarities in the shapes of muscle attachment sites and skeletal anatomy, and interpreted that its cheetah-like characteristics were independently evolved adaptations, but Adams claimed that it was a member of the cheetah lineage in 1979. Adams and other researchers argued that the ancestors of the cheetah originated from the Americas and migrated to the Old World, while Van Valkenburgh and colleagues contended that cheetahs evolved from Africa and that its similarities with Miracinonyx can be explained as convergent evolution (independent evolution of analogous traits under similar environmental pressures). In a 2005 analysis of a mitochondrial DNA sample of M. trumani, American geneticist Ross Barnett and colleagues found that the taxon is most closely related to the cougar and not to the modern cheetah of Africa and Asia. In support of the proposed close relationship between the cougar and M. trumani, Argentine researcher Nicolás R. Chimento and colleagues considered Miracinonyx as a subgenus of the genus Puma in 2014. They assigned species of Miracinonyx to as Puma (Miracinonyx) trumani and Puma (Miracinonyx) inexpectata, and suggested that "F." studeri was possibly a subspecies of the latter, Puma (Miracinonyx) inexpectata studeri. In contrast, American geneticist Stephen J. O'Brien and colleagues claimed in a 2016 paper that there is no conclusive anatomical or genetic basis for completely dismissing a homologous (common ancestry) relationship between Acinonyx and Miracinonyx, and that it is inadequate to explain their similarities only through their supposed convergent evolution.

In 2026, American geneticist Molly Cassatt-Johnstone and colleagues examined the mitochondrial and nuclear genomes of M. trumani, which were obtained from three specimens found in the Quartz Creek and Bluefish Caves of Yukon, Canada and from one specimen found in the Natural Trap Cave of Wyoming, United States. The specimens from Yukon and Wyoming had very similar genomes, indicating that the species had low genetic diversity across its populations, and that the populations from each region likely diverged in the Late Pleistocene, so the expansion of its range to Yukon was relatively recent. The Yukon specimens also showed evidence of loss-of-function mutation, a genetic change that partially or totally inactivates the function of the gene product, specifically for genes involved in circadian rhythm regulation, which are consistent with modern mammals that live in high latitudes. The authors' genome analysis also confidently supported that the cougar is the closest relative of M. trumani, and that the estimated time of divergence between each of their lineage is approximately 2.6 million years ago. The simplified version of their maximum-likelihood phylogenetic analysis is displayed in the cladogram below.Figure S1

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